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Transfer Pricing in 2026 — The Hidden Risk in Your Global Transactions

Why Transfer Pricing Is No Longer Just a Big-Company Problem

There was a time when transfer pricing was a concern only for the top 500 Indian corporates — the Tatas, the Infosyses, the subsidiaries of Fortune 500 multinationals.

That time is over.

Today:

  • A mid-sized IT services company in Chennai billing its Singapore holding company
  • A Pune-based manufacturer selling components to its German parent
  • A Bengaluru startup paying royalties to its Delaware IP holding entity

All of them are squarely within India’s transfer pricing regime — and most are not adequately prepared.


The Scale of the Shift

  • ₹40,000+ crores collected in TP adjustments in a recent cycle
  • Increasing TP litigation across courts and tribunals
  • OECD BEPS framework embedded into Indian law
  • Access to CbCR, Master File, and Local File data

Tax authorities today have unprecedented visibility into how profits are allocated globally.

If your business has related-party transactions — international or even domestic — this matters to you.


What Is Transfer Pricing?

When unrelated parties transact, prices are determined by market forces.

When related parties transact, prices can be manipulated, affecting:

  • Profit allocation
  • Tax jurisdiction
  • Overall tax liability

Transfer pricing rules ensure that related-party transactions occur at arm’s length — as if between independent entities.

Risk of Non-Compliance

If prices deviate:

  • Income is adjusted upward
  • Additional tax is levied
  • Interest and penalties apply
  • Case may be referred for TP audit

The Indian Transfer Pricing Framework

Legal Backbone

Sections 92 to 92F of the Income Tax Act cover:

  • International transactions
  • Specified domestic transactions
  • Deemed international transactions

Associated Enterprises (AE)

Entities are considered related if there is:

  • ≥26% shareholding
  • Management/control overlap
  • Significant loan financing
  • Other prescribed relationships

Accepted Methods

  • CUP (Comparable Uncontrolled Price)
  • RPM (Resale Price Method)
  • CPM (Cost Plus Method)
  • PSM (Profit Split Method)
  • TNMM (Transactional Net Margin Method)

TNMM dominates in India, especially for IT/ITES.


What Has Changed (2024–2026)

1. BEPS Is Now Enforced Reality

Country-by-Country Reporting (CbCR)

Applicable for groups with revenue > ₹5,500 crores
Provides jurisdiction-wise:

  • Revenue
  • Profit
  • Tax paid
  • Employees
  • Assets

Master File & Local File

  • Master File: Global structure, value chain
  • Local File: Entity-level transaction analysis

Principal Purpose Test (PPT)

Treaty benefits denied if tax avoidance is a primary purpose

Multilateral Instrument (MLI)

Treaties updated without renegotiation — structures may be reinterpreted


2. Safe Harbour Rules (Updated)

Predefined margins for:

  • IT / ITES: 17%–24%
  • KPO: 24%
  • Contract R&D: 24%
  • Loans & guarantees: Prescribed spreads

⚠️ Many businesses cannot sustain these margins, forcing full benchmarking.


3. Domestic Transfer Pricing

Applies if transactions exceed ₹20 crores, including:

  • Related-party payments
  • SEZ-linked transactions
  • Tax-incentive-based structures

The 5 Most Litigated TP Areas

1. IT & Software Services

  • Classification as captive / low-risk entities
  • Authorities often push for higher margins

2. Royalties & Intangibles

  • DEMPE framework focus
  • Substance over legal ownership

3. Management Fees

  • Were services actually rendered?
  • Is allocation justified?

4. Intra-Group Financing

  • Interest rates
  • Guarantee fees
  • Cash pooling structures

5. Business Restructuring

  • Exit charges
  • Transfer of profit potential

Advance Pricing Agreements (APA)

What Is an APA?

A binding agreement with tax authorities on:

  • Pricing methodology
  • Arm’s length pricing

Key Benefits

  • Certainty (up to 5 years + 4-year rollback)
  • Reduced litigation
  • Elimination of double taxation (in bilateral APAs)

Types

  • Unilateral APA – Faster, India-only certainty
  • Bilateral APA – Full protection from double taxation

Documentation: Non-Negotiable

Penalties

  • Section 271AA: 2% of transaction value (no documentation)
  • Section 271G: 2% (failure to furnish data)

Required Documentation (Rule 10D)

  • Group & entity overview
  • Functional analysis (FAR)
  • Comparability study
  • Method selection & justification
  • Pricing computation

Quality matters more than volume. Boilerplate documentation fails audits.


Secondary Adjustment Risk

Under Section 92CE:

If TP adjustment occurs:

  • Excess amount treated as loan to foreign AE
  • Notional interest charged if not repatriated

This creates ongoing financial impact, not just a one-time tax cost.


Practical Action Plan (FY 2026–27)

✔ Review inter-company agreements
✔ Conduct functional analysis
✔ Benchmark margins
✔ File Form 3CEB on time
✔ Evaluate safe harbour eligibility
✔ Consider APA for large transactions
✔ Assess secondary adjustment exposure


Mutual Agreement Procedure (MAP)

Used to resolve double taxation:

  • Involves treaty partner countries
  • Increasingly efficient post-BEPS
  • Applicable for major jurisdictions (US, UK, Japan, Germany, etc.)

The IPRS Perspective

Transfer pricing is not just compliance — it is strategic.

Businesses that manage TP well:

  • Maintain updated agreements
  • Perform proactive benchmarking
  • Involve leadership (CFO/Board)

Businesses that don’t:

  • Face higher adjustments
  • Experience prolonged litigation
  • Suffer double taxation

Conclusion

India’s TP environment today is:

  • More data-driven
  • More scrutinized
  • More consequential

At the same time, tools like:

  • APAs
  • MAP
  • Safe harbours
  • Robust documentation

…offer strong protection — if used proactively.

The gap between proactive and reactive businesses has never been wider.

If you have not reviewed your transfer pricing policy in the last 12 months, now is the time.

Palani P
Apr 10, 2026 · 15 min read
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How much should I dilute?

Dilution: More Than Just Math — The Corporate Governance Behind Startup Fundraising

The invariable question asked by every startup that has burned through its cash (much like the Joker in The Dark Knight) during a fundraising round is:

"How much equity should we dilute?"

It's also the same question answered every other day by finance professionals—a true Groundhog Day scenario.

While dilution is usually discussed as a financial exercise, its implications go far beyond valuation. Every percentage point of equity given away has long-term consequences on control, governance, and decision-making.


The Mathematical Answer

The textbook approach is straightforward.

  1. Determine the Enterprise Value (EV).
  2. Estimate future cash flows.
  3. Calculate the Cost of Equity.
  4. Discount those cash flows using Discounted Cash Flow (DCF).
  5. Arrive at the Enterprise Value.

Simple enough to write.

Much harder to explain to a founder.

Trying to explain DCF to an entrepreneur often feels like explaining Christopher Nolan's Memento—you don't know where it starts, and neither do they.

Apart from DCF, other valuation methods include:

  • Comparable Multiples
  • Net Book Value
  • Berkus Method
  • Venture Capital Method
  • Scorecard Method

Once valuation is determined:

Dilution % = Funds Required ÷ Pre-money Valuation

A clean, mathematical and emotionless way of deciding how much ownership the founders must part with.


But Dilution Is More Than Mathematics

Dilution can range anywhere from 1% to 100%.

Financially, it's simply ownership being transferred.

Practically, it's the transfer of power.

The percentage founders retain determines not only future economic benefits but also:

  • Operational control
  • Voting rights
  • Board influence
  • Ability to raise future capital
  • Long-term governance

This is where finance meets corporate law.


Looking Through the Lens of Corporate Law

A seemingly insignificant 2% difference between 49% and 51% completely changes who controls the company.

Likewise:

  • 50% vs 50% can create deadlocks.
  • 74% vs 26% determines whether minority shareholders can block major decisions.
  • 76% vs 24% decides whether one shareholder has unrestricted control.

Choosing the right dilution isn't just about valuation.

It's about designing a governance structure that allows the company to continue operating effectively.


The Three Critical Shareholding Structures

  1. 51% vs 49%
  2. 74% vs 26%
  3. 76% vs 24%

Each carries very different governance implications.


1. 51% vs 49% — Operational Control

This structure is common in Joint Ventures.

Financially, the difference is only 2%.

Governance-wise, it's everything.

The shareholder owning 51% controls all matters decided through an Ordinary Resolution.

This means day-to-day operational decisions can be passed without the approval of the minority shareholder.

Think of it like an arm wrestling match.

The weight difference is only 2%.

But whenever a simple majority is sufficient, 51% wins every time.

Example: Reliance & Network18

Network18 was rapidly losing money and required funding.

Reliance invested through Zero Coupon Optionally Convertible Debentures (OCDs).

Because the instrument carried zero coupon, Network18 had no immediate interest burden.

The debentures had a conversion period of 10 years.

However, after roughly 2.5 years, Reliance exercised its conversion option.

The conversion resulted in Reliance owning approximately 73% of Network18.

Operational control shifted entirely to Reliance, effectively bringing an end to promoter Raghav Bahl's control.


2. 74% vs 26% — Blocking Special Resolutions

Ordinary resolutions require only a simple majority.

Certain extraordinary corporate decisions, however, require a Special Resolution.

Under the Companies Act, these generally require 75% of votes cast to be in favour (often simplified in practice as needing around 76% support).

Examples include:

  • Altering the Articles of Association
  • Major restructuring
  • Mergers
  • Reduction of capital
  • Certain fundraising decisions
  • Other extraordinary corporate actions

Here lies the importance of 26% ownership.

A shareholder with 26% can effectively block any proposal requiring a Special Resolution.

This protection exists to safeguard minority shareholders from being overridden on major strategic decisions.

So while 51% provides operational control, 26% provides veto power over extraordinary matters.

Example: Reliance & Dunzo

Reliance acquired approximately 26% in Dunzo.

As Dunzo continued burning cash, it required another funding round.

Existing shareholders were unwilling to invest further.

Dunzo sought external investors.

However, Reliance—holding 26%—was able to oppose the proposal.

Because the transaction required approval through a Special Resolution, Reliance's minority stake effectively blocked the fundraising.

A minority shareholder became powerful enough to halt a critical corporate decision.


3. 76% vs 24% — Supermajority

Owning 76% or more effectively provides unrestricted voting power.

The shareholder can independently pass:

  • Ordinary Resolutions
  • Special Resolutions

There is no longer a need to negotiate with minority shareholders for corporate approvals.

The remaining 24% shareholder becomes largely a financial investor with limited influence over governance.


Example: Tata Sons vs Cyrus Mistry

Tata Sons was primarily controlled by:

  • Tata Trusts (holding more than 76%, directly and indirectly)
  • Shapoorji Pallonji Group (holding approximately 18.4%)

Cyrus Mistry, representing the Shapoorji Pallonji Group, served as Chairman of Tata Sons.

Following disagreements between the parties, Tata Sons removed him from the position.

The matter eventually reached the Supreme Court.

However, Tata Trusts' supermajority ensured that the governance decisions remained firmly under their control.


Summary of Governance Thresholds

| Shareholding | Significance | Effect | |--------------|--------------|--------| | 51% / 49% | Operational Control | Majority shareholder controls day-to-day decisions through Ordinary Resolutions. | | 74% / 26% | Minority Protection | The 26% shareholder can block Special Resolutions. | | 76% / 24% | Supermajority | Majority shareholder can independently pass both Ordinary and Special Resolutions. |


Conclusion

Dilution is often presented as a valuation exercise.

In reality, it is a governance decision.

Every basis point of equity transferred affects not only ownership but also:

  • Control
  • Voting power
  • Future fundraising flexibility
  • Board dynamics
  • Long-term strategic direction

While valuation determines how much equity should be issued, corporate law determines what that equity is capable of controlling.

For founders, investors, and finance professionals alike, keeping these critical ownership thresholds in mind can make the difference between a company that functions smoothly and one that becomes trapped in governance deadlocks.

At the end of every fundraising round, the question shouldn't merely be:

"How much equity are we giving away?"

It should also be:

"What rights and control are we giving away with it?"

Ashwin V
Jul 2, 2025 · 5 min read
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Section 16(5) of the CGST Act

As a GST professional, I have often observed that an amendment intended to settle one controversy can sometimes give rise to an entirely new set of legal questions. The retrospective insertion of Section 16(5) of the CGST Act is one such instance. It undoubtedly brought much-needed relief to taxpayers whose otherwise eligible Input Tax Credit (ITC) had been denied merely because it was claimed beyond the time limit prescribed under Section 16(4). But has Section 16(5) really put an end to the litigation? Perhaps not. While the amendment has resolved the substantive question of ITC eligibility in many cases, it has simultaneously raised more complex questions concerning retrospective legislation, concluded proceedings, recovery of confirmed demands and the principle of finality. First, what is Input Tax Credit? For readers who may not deal with GST on a regular basis, Input Tax Credit, commonly known as ITC, is one of the fundamental features of the GST system. In simple terms, when a business pays GST on its purchases, it can generally use that tax as credit against the GST payable on its sales, subject to fulfilment of prescribed conditions. For example, if a business pays ₹1,00,000 as GST on its purchases and has a GST liability of ₹1,50,000 on its sales, it may generally use the ₹1,00,000 as ITC and pay only the balance ₹50,000 in cash. "As a GST professional, I have often observed that an amendment intended to settle one controversy can sometimes give rise to an entirely new set of legal questions. The retrospective insertion of Section 16(5) of the CGST Act is one such instance. It undoubtedly brought much-needed relief to taxpayers whose otherwise eligible Input Tax Credit (ITC) had been denied merely because it was claimed beyond the time limit prescribed under Section 16(4).

Section 16(5) of the CGST Act – Analysis

Introduction

As a GST professional, I have often observed that an amendment intended to settle one controversy can sometimes give rise to an entirely new set of legal questions.

The retrospective insertion of Section 16(5) of the CGST Act is one such instance.

It undoubtedly brought much-needed relief to taxpayers whose otherwise eligible Input Tax Credit (ITC) had been denied merely because it was claimed beyond the time limit prescribed under Section 16(4).

But has Section 16(5) really put an end to the litigation?

Perhaps not.

While the amendment has resolved the substantive question of ITC eligibility in many cases, it has simultaneously raised more complex questions concerning retrospective legislation, concluded proceedings, recovery of confirmed demands and the principle of finality.

First, what is Input Tax Credit?

For readers who may not deal with GST on a regular basis, Input Tax Credit, commonly known as ITC, is one of the fundamental features of the GST system.

In simple terms, when a business pays GST on its purchases, it can generally use that tax as credit against the GST payable on its sales, subject to fulfilment of prescribed conditions.

For example, if a business pays ₹1,00,000 as GST on its purchases and has a GST liability of ₹1,50,000 on its sales, it may generally use the ₹1,00,000 as ITC and pay only the balance ₹50,000 in cash.

But what happens when an otherwise eligible ITC is claimed late?

That question resulted in substantial litigation under Section 16(4) of the CGST Act.

What does Section 16(4) say?

In simple terms, Section 16(4) prescribes the outer time limit within which a taxpayer can claim ITC relating to an invoice or debit note.

... But has Section 16(5) really put an end to the litigation? Perhaps not. While the amendment has resolved the substantive question of ITC eligibility in many cases, it has simultaneously raised more complex questions concerning retrospective legislation, concluded proceedings, recovery of confirmed demands and the principle of finality.

First, what is Input Tax Credit? For readers who may not deal with GST on a regular basis, Input Tax Credit, commonly known as ITC, is one of the fundamental features of the GST system. In simple terms, when a business pays GST on its purchases, it can generally use that tax as credit against the GST payable on its sales, subject to fulfilment of prescribed conditions. For example, if a business pays Rs.1,00,000 as GST on its purchases and has a GST liability of Rs.1,50,000 on its sales, it may generally use the Rs.1,00,000 as ITC and pay only the balance Rs.50,000 in cash. But what happens when an otherwise eligible ITC is claimed late? That question resulted in substantial litigation under Section 16(4) of the CGST Act.

What does Section 16(4) say? In simple terms, Section 16(4) prescribes the outer time limit within which a taxpayer can claim ITC relating to an invoice or debit note. During the initial years of GST, this provision resulted in denial of ITC where credit was claimed beyond the statutory deadline, even in cases where the underlying purchases were genuine and the taxpayer otherwise satisfied the substantive conditions for claiming credit. The issue was particularly significant during the early GST years, when businesses and the tax administration were adapting to a completely new indirect tax regime, evolving compliance requirements and technological challenges.

What relief does Section 16(5) provide? Section 16(5) was introduced by the Finance (No. 2) Act, 2024 with retrospective effect from 1 July 2017. In simple terms, it provides a special relaxation for the first four financial years of GST: 2017-18, 2018-19, 2019-20 and 2020-21. For these years, ITC relating to an invoice or debit note can be claimed if it was taken in a return under Section 39 filed on or before 30 November 2021.

Section 39, put simply, deals with periodic GST returns. For most regular taxpayers, the relevant return through which ITC is availed is GSTR-3B. Therefore, if a taxpayer claimed otherwise eligible ITC relating to any of these four financial years through a GSTR-3B filed on or before 30 November 2021, Section 16(5) protects that credit from denial solely because of the earlier time restriction under Section 16(4). The legislative intention appears clear: taxpayers satisfying this extended timeline should not lose otherwise eligible ITC merely because of the original deadline under Section 16(4).

Pending proceedings and the special rectification mechanism Where proceedings are still pending before an adjudicating authority, appellate authority or court, the position is comparatively straightforward. Since Section 16(5) expressly operates retrospectively from 1 July 2017, the amended law must ordinarily be considered while deciding the taxpayer's eligibility to ITC.

The Government also introduced a special rectification mechanism through Notification No. 22/2024-Central Tax dated 8 October 2024 for specified orders involving ITC denied under Section 16(4), where the credit subsequently became eligible under Section 16(5) or Section 16(6).

For readers unfamiliar with these provisions:

  • Section 73 broadly deals with tax demands in cases not involving fraud, wilful misstatement or suppression of facts.
  • Section 74 broadly deals with tax demands where fraud, wilful misstatement or suppression of facts is alleged.
  • Section 107 deals with appeals against GST orders before the First Appellate Authority.
  • Section 108 gives specified higher authorities the power to examine and, in appropriate cases, revise orders passed by subordinate GST officers.

The special rectification mechanism covers specified orders under these provisions where ITC was denied for contravention of Section 16(4) but subsequently became eligible under Section 16(5) or Section 16(6). CBIC Circular No. 237/31/2024-GST [F. NO. CBIC-20001/6/2024-GST] dated 15 October 2024 further clarified how the retrospective amendment should be implemented at different stages of proceedings. For taxpayers falling squarely within this mechanism, the route to relief is comparatively clear.

The harder questions arise outside these straightforward situations.

Retrospective relief vs finality of proceedings Consider a taxpayer whose ITC was denied solely under Section 16(4). Several situations are possible:

  • The taxpayer may have paid the demand without filing an appeal.
  • An appeal may have been filed and rejected.
  • The limitation period for filing an appeal may have expired.
  • Recovery proceedings may already have been completed.
  • Or the order may have attained finality while the demand itself remains unpaid.

Following the retrospective insertion of Section 16(5), the very substantive basis on which the ITC was denied may no longer survive. This leads to a fundamental question: can a tax demand continue to be enforced when the retrospectively amended law recognises that the ITC was legally available at the relevant point of time?

The answer involves a tension between two established legal principles. On the one hand, retrospective legislation requires the law to be applied from the date specified by the legislature, even though the amendment itself was enacted later. On the other hand, the law also recognises the importance of finality. Judicial and quasi-judicial orders cannot ordinarily be reopened indefinitely merely because the underlying legal position subsequently changes. This tension between substantive retrospective relief and procedural finality is where some of the most interesting questions surrounding Section 16(5) arise.

What has the Supreme Court said about retrospective legislation? The Constitution Bench judgment of the Supreme Court in Commissioner of Income Tax (Central)-I, New Delhi v. Vatika Township Private Limited, (2015) 1 SCC 1 remains one of the leading authorities on retrospective legislation. The Supreme Court explained the general principle that legislation imposing a new obligation, liability or disability is ordinarily presumed to operate prospectively unless the legislature clearly provides otherwise.

Section 16(5), however, presents a different situation. Parliament has expressly made the provision retrospective from 1 July 2017. Therefore, there is no real ambiguity about whether the provision operates retrospectively. The more difficult question is: how far can this retrospective benefit travel into proceedings that have already attained finality? That question cannot necessarily be answered merely by establishing that Section 16(5) is retrospective. The procedural status of each case remains important.

Parliament has expressly barred certain refunds The legislature has specifically addressed one important category of cases. The Finance (No. 2) Act, 2024 provides that where tax has already been paid or ITC has already been reversed which would not have been so paid or reversed had Section 16(5) or Section 16(6) been in force at the relevant time, no refund shall be granted.

In simple English: if a taxpayer had already paid the tax or reversed the ITC before receiving the benefit of the retrospective amendment, Section 16(5) does not automatically entitle the taxpayer to get that money or credit back as a refund. CBIC Circular No. 237/31/2024-GST [F. NO. CBIC-20001/6/2024-GST] dated 15 October 2024 reiterates this position.

The consequence is significant. Two taxpayers with identical ITC claims may ultimately face entirely different economic outcomes:

  • A taxpayer whose dispute remained pending may receive the benefit of Section 16(5).
  • Another taxpayer who promptly paid the demand or reversed the ITC may be barred from obtaining a refund.

This raises an important policy question: should retrospective tax relief effectively depend upon whether a taxpayer continued to litigate rather than complied with the original demand? The statutory position regarding refunds may be express. From the perspective of tax equity, however, the question remains worthy of discussion.

The Supreme Court in Mafatlal Industries The landmark nine-judge Bench judgment of the Supreme Court in Mafatlal Industries Ltd. v. Union of India, (1997) 5 SCC 536 is relevant when considering claims for refund of indirect taxes. The Supreme Court broadly emphasised that refund claims relating to indirect taxes must ordinarily be pursued within the statutory framework created by the legislature and subject to the conditions and limitations contained in that framework. A taxpayer therefore cannot necessarily assume that a retrospective change in substantive law automatically creates an unrestricted right to reopen concluded proceedings or obtain a refund. This becomes particularly relevant where Parliament itself has expressly barred refunds of amounts already paid or ITC already reversed. However, Mafatlal must be applied carefully and in its proper context. The constitutional dimensions of an exceptional case may depend upon its precise facts, the nature of the levy and the remedy sought.

The most interesting question: a final order but an unpaid demand In my view, one of the most legally interesting situations arises where an adverse order has attained finality, but the tax demand remains unpaid. Consider this example: a taxpayer's ITC was denied solely because it was claimed beyond the deadline under Section 16(4). An adjudication order was passed. The taxpayer did not appeal within the prescribed period, and the order attained finality. However, the Department has not yet recovered the demand. Subsequently, Section 16(5) is introduced retrospectively, and under the amended law, the ITC in question is clearly eligible.

Can the Department nevertheless recover the demand because the original adjudication order has attained finality? Or can the taxpayer contend that recovery of a demand whose substantive foundation has retrospectively ceased to exist would be legally unsustainable?

The issue becomes particularly interesting because the statutory refund bar expressly deals with amounts already paid or ITC already reversed. It does not, by itself, expressly state that an unpaid demand must necessarily continue to be recovered despite the retrospective validation of the underlying ITC. At the same time, the principle of finality cannot simply be ignored.

The answer may therefore depend upon the precise procedural history of each case, including whether the ITC was denied solely under Section 16(4), whether other grounds for denial were involved, whether the taxpayer was eligible for the special rectification mechanism, whether any statutory appellate remedy remains available and whether the extraordinary writ jurisdiction of a High Court can appropriately be invoked. This is an area where further judicial guidance would be particularly valuable.

What are the High Courts saying specifically about Section 16(5)? The judicial trend is increasingly clear in cases where proceedings remain pending or the relevant order remains under challenge. In Tvl. Sri Balaji Metal Trading v. Deputy State Tax Officer, (W.M.P. (MD) Nos. 12417, 12418 & 12420 of 2025, June 18, 2025), the Madras High Court considered the retrospective insertion of Section 16(5) and granted relief in respect of ITC denied on limitation grounds, subject to satisfaction of the statutory conditions. Similarly, in M/s. Selva Vilas Jewellery v. Superintendent of GST and Central Excise, (W.M.P. (MD) Nos. 27970 & 27972 of 2025, January 7, 2026), the Madras High Court recognised the retrospective effect of Section 16(5) in relation to ITC claims for the specified financial years.

The broad principle emerging from these decisions is relatively straightforward: where ITC satisfies the conditions of Section 16(5), it should not continue to be denied solely because of the earlier time restriction under Section 16(4). These decisions are important. But they do not necessarily answer every question involving orders that have long attained finality, amounts already paid, expired appellate remedies or unrecovered demands. That may well be the next frontier of Section 16(5) litigation.

The cases that may still generate litigation The genuinely difficult cases are likely to involve orders that have attained finality, appeals dismissed on limitation, taxpayers who never filed appeals, recovery proceedings based on pre-amendment orders, voluntary payments through DRC-03, payments made under protest, demands partly paid and partly outstanding, and cases involving multiple grounds for ITC denial where Section 16(4) was only one of the issues. The precise factual and procedural distinctions in each case may significantly affect the relief available.

A larger question of tax equity Suppose two taxpayers had identical ITC claims. Both claimed their ITC after the original Section 16(4) deadline but before 30 November 2021. The first taxpayer challenged the demand and continued litigating until Section 16(5) was introduced. The taxpayer now receives the benefit of the retrospective amendment. The second taxpayer promptly complied with the demand and paid the tax. Because of the express statutory refund restriction, that taxpayer may not receive the money back.

The difference in economic outcome arises not from any difference in substantive eligibility for ITC, but from the procedural position in which each taxpayer happened to find themselves when the retrospective amendment was enacted. This leads to a question worth reflecting upon: should a tax system create a situation where continued litigation ultimately produces a more favourable outcome than prompt compliance? The answer may be legally settled by the statutory language. The larger question of tax equity, however, remains.

Has Section 16(5) ended the litigation? Section 16(5) has unquestionably resolved a major category of ITC disputes. But it would be premature to conclude that litigation surrounding the time limit for claiming ITC has ended. The amendment has simply changed the questions being litigated.

Earlier, the principal question was: was the ITC claimed within the time limit prescribed under Section 16(4)?

The emerging questions are far more nuanced:

  • Can a concluded order be reopened in light of retrospective beneficial legislation?
  • Can an unrecovered demand continue to be enforced when its substantive foundation has retrospectively disappeared?
  • What remedy is available to a taxpayer whose appeal was rejected solely on limitation?
  • Can a taxpayer who has already paid the demand ever successfully challenge the statutory refund bar?
  • And should two taxpayers with identical substantive eligibility face different outcomes merely because one paid the demand while the other continued to litigate?

These questions extend beyond Section 16(5). They concern the larger relationship between substantive justice, procedural finality and certainty in tax administration.

Section 16(5) may have closed one chapter of GST litigation. But it has certainly opened another.

I would be interested to hear the views of fellow tax professionals, legal practitioners and businesses: do you believe Section 16(5) has truly resolved the controversy, or has it merely shifted the litigation to a new set of questions?

#GST #InputTaxCredit #Section16 #CGST #TaxLitigation #IndirectTax #TaxLaw"

But what happens when an otherwise eligible ITC is claimed late? That question resulted in substantial litigation under Section 16(4) of the CGST Act. What does Section 16(4) say? In simple terms, Section 16(4) prescribes the outer time limit within which a taxpayer can claim ITC relating to an invoice or debit note. During the initial years of GST, this provision resulted in denial of ITC where credit was claimed beyond the statutory deadline, even in cases where the underlying purchases were genuine and the taxpayer otherwise satisfied the substantive conditions for claiming credit. The issue was particularly significant during the early GST years, when businesses and the tax administration were adapting to a completely new indirect tax regime, evolving compliance requirements and technological challenges. What relief does Section 16(5) provide? Section 16(5) was introduced by the Finance (No. 2) Act, 2024 with retrospective effect from 1 July 2017. In simple terms, it provides a special relaxation for the first four financial years of GST: 2017-18, 2018-19, 2019-20 and 2020-21. For these years, ITC relating to an invoice or debit note can be claimed if it was taken in a return under Section 39 filed on or before 30 November 2021. Section 39, put simply, deals with periodic GST returns. For most regular taxpayers, the relevant return through which ITC is availed is GSTR-3B. Therefore, if a taxpayer claimed otherwise eligible ITC relating to any of these four financial years through a GSTR-3B filed on or before 30 November 2021, Section 16(5) protects that credit from denial solely because of the earlier time restriction under Section 16(4). The legislative intention appears clear: taxpayers satisfying this extended timeline should not lose otherwise eligible ITC merely because of the original deadline under Section 16(4). Pending proceedings and the special rectification mechanism Where proceedings are still pending before an adjudicating authority, appellate authority or court, the position is comparatively straightforward. Since Section 16(5) expressly operates retrospectively from 1 July 2017, the amended law must ordinarily be considered while deciding the taxpayer's eligibility to ITC. The Government also introduced a special rectification mechanism through Notification No. 22/2024-Central Tax dated 8 October 2024 for specified orders involving ITC denied under Section 16(4), where the credit subsequently became eligible under Section 16(5) or Section 16(6). For readers unfamiliar with these provisions: • Section 73 broadly deals with tax demands in cases not involving fraud, wilful misstatement or suppression of facts. • Section 74 broadly deals with tax demands where fraud, wilful misstatement or suppression of facts is alleged. • Section 107 deals with appeals against GST orders before the First Appellate Authority. • Section 108 gives specified higher authorities the power to examine and, in appropriate cases, revise orders passed by subordinate GST officers. The special rectification mechanism covers specified orders under these provisions where ITC was denied for contravention of Section 16(4) but subsequently became eligible under Section 16(5) or Section 16(6). CBIC Circular No. 237/31/2024-GST GST [F. NO. CBIC-20001/6/2024-GST] dated 15 October 2024 further clarified how the retrospective amendment should be implemented at different stages of proceedings. For taxpayers falling squarely within this mechanism, the route to relief is comparatively clear. The harder questions arise outside these straightforward situations. Retrospective relief Vs finality of proceedings Consider a taxpayer whose ITC was denied solely under Section 16(4). Several situations are possible.  The taxpayer may have paid the demand without filing an appeal.  An appeal may have been filed and rejected.  The limitation period for filing an appeal may have expired.  Recovery proceedings may already have been completed.  Or the order may have attained finality while the demand itself remains unpaid. Following the retrospective insertion of Section 16(5), the very substantive basis on which the ITC was denied may no longer survive. This leads to a fundamental question: Can a tax demand continue to be enforced when the retrospectively amended law recognises that the ITC was legally available at the relevant point of time? The answer involves a tension between two established legal principles. • On the one hand, retrospective legislation requires the law to be applied from the date specified by the legislature, even though the amendment itself was enacted later. • On the other hand, the law also recognises the importance of finality. Judicial and quasi-judicial orders cannot ordinarily be reopened indefinitely merely because the underlying legal position subsequently changes. This tension between substantive retrospective relief and procedural finality is where some of the most interesting questions surrounding Section 16(5) arise. What has the Supreme Court said about retrospective legislation? The Constitution Bench judgment of the Supreme Court in Commissioner of Income Tax (Central)-I, New Delhi v. Vatika Township Private Limited, (2015) 1 SCC 1 remains one of the leading authorities on retrospective legislation. The Supreme Court explained the general principle that legislation imposing a new obligation, liability or disability is ordinarily presumed to operate prospectively unless the legislature clearly provides otherwise. Section 16(5), however, presents a different situation. Parliament has expressly made the provision retrospective from 1 July 2017. Therefore, there is no real ambiguity about whether the provision operates retrospectively. The more difficult question is: How far can this retrospective benefit travel into proceedings that have already attained finality? That question cannot necessarily be answered merely by establishing that Section 16(5) is retrospective. The procedural status of each case remains important. Parliament has expressly barred certain refunds The legislature has specifically addressed one important category of cases. The Finance (No. 2) Act, 2024 provides that where tax has already been paid or ITC has already been reversed which would not have been so paid or reversed had Section 16(5) or Section 16(6) been in force at the relevant time, no refund shall be granted. In simple English: If a taxpayer had already paid the tax or reversed the ITC before receiving the benefit of the retrospective amendment, Section 16(5) does not automatically entitle the taxpayer to get that money or credit back as a refund. CBIC Circular No. 237/31/2024-GST [F. NO. CBIC-20001/6/2024-GST] dated 15 October 2024 reiterates this position. The consequence is significant. Two taxpayers with identical ITC claims may ultimately face entirely different economic outcomes.  A taxpayer whose dispute remained pending may receive the benefit of Section 16(5).  Another taxpayer who promptly paid the demand or reversed the ITC may be barred from obtaining a refund. This raises an important policy question: Should retrospective tax relief effectively depend upon whether a taxpayer continued to litigate rather than complied with the original demand? The statutory position regarding refunds may be express. From the perspective of tax equity, however, the question remains worthy of discussion. The Supreme Court in Mafatlal Industries The landmark nine-judge Bench judgment of the Supreme Court in Mafatlal Industries Ltd. v. Union of India, (1997) 5 SCC 536 is relevant when considering claims for refund of indirect taxes. The Supreme Court broadly emphasised that refund claims relating to indirect taxes must ordinarily be pursued within the statutory framework created by the legislature and subject to the conditions and limitations contained in that framework. A taxpayer therefore cannot necessarily assume that a retrospective change in substantive law automatically creates an unrestricted right to reopen concluded proceedings or obtain a refund. This becomes particularly relevant where Parliament itself has expressly barred refunds of amounts already paid or ITC already reversed. However, Mafatlal must be applied carefully and in its proper context. The constitutional dimensions of an exceptional case may depend upon its precise facts, the nature of the levy and the remedy sought. The most interesting question: A final order but an unpaid demand In my view, one of the most legally interesting situations arises where an adverse order has attained finality, but the tax demand remains unpaid. Consider this example. A taxpayer's ITC was denied solely because it was claimed beyond the deadline under Section 16(4). An adjudication order was passed. The taxpayer did not appeal within the prescribed period, and the order attained finality. However, the Department has not yet recovered the demand. Subsequently, Section 16(5) is introduced retrospectively, and under the amended law, the ITC in question is clearly eligible. Can the Department nevertheless recover the demand because the original adjudication order has attained finality? Or can the taxpayer contend that recovery of a demand whose substantive foundation has retrospectively ceased to exist would be legally unsustainable? The issue becomes particularly interesting because the statutory refund bar expressly deals with amounts already paid or ITC already reversed. It does not, by itself, expressly state that an unpaid demand must necessarily continue to be recovered despite the retrospective validation of the underlying ITC. At the same time, the principle of finality cannot simply be ignored. The answer may therefore depend upon the precise procedural history of each case, including whether the ITC was denied solely under Section 16(4), whether other grounds for denial were involved, whether the taxpayer was eligible for the special rectification mechanism, whether any statutory appellate remedy remains available and whether the extraordinary writ jurisdiction of a High Court can appropriately be invoked. This is an area where further judicial guidance would be particularly valuable. What are the High Courts saying specifically about Section 16(5)? The judicial trend is increasingly clear in cases where proceedings remain pending or the relevant order remains under challenge. In Tvl. Sri Balaji Metal Trading v. Deputy State Tax Officer, (W.M.P. (MD) Nos. 12417, 12418 & 12420 of 2025,JUNE 18, 2025) the Madras High Court considered the retrospective insertion of Section 16(5) and granted relief in respect of ITC denied on limitation grounds, subject to satisfaction of the statutory conditions. Similarly, in M/s. Selva Vilas Jewellery v. Superintendent of GST and Central Excise, (W.M.P. (MD) Nos. 27970 & 27972 of 2025, JANUARY 7, 2026) the Madras High Court recognised the retrospective effect of Section 16(5) in relation to ITC claims for the specified financial years. The broad principle emerging from these decisions is relatively straightforward: Where ITC satisfies the conditions of Section 16(5), it should not continue to be denied solely because of the earlier time restriction under Section 16(4). These decisions are important. But they do not necessarily answer every question involving orders that have long attained finality, amounts already paid, expired appellate remedies or unrecovered demands. That may well be the next frontier of Section 16(5) litigation. The cases that may still generate litigation The genuinely difficult cases are likely to involve orders that have attained finality, appeals dismissed on limitation, taxpayers who never filed appeals, recovery proceedings based on pre-amendment orders, voluntary payments through DRC-03, payments made under protest, demands partly paid and partly outstanding, and cases involving multiple grounds for ITC denial where Section 16(4) was only one of the issues. The precise factual and procedural distinctions in each case may significantly affect the relief available. A larger question of tax equity Suppose two taxpayers had identical ITC claims. Both claimed their ITC after the original Section 16(4) deadline but before 30 November 2021. The first taxpayer challenged the demand and continued litigating until Section 16(5) was introduced. The taxpayer now receives the benefit of the retrospective amendment. The second taxpayer promptly complied with the demand and paid the tax. Because of the express statutory refund restriction, that taxpayer may not receive the money back. The difference in economic outcome arises not from any difference in substantive eligibility for ITC, but from the procedural position in which each taxpayer happened to find themselves when the retrospective amendment was enacted. This leads to a question worth reflecting upon: Should a tax system create a situation where continued litigation ultimately produces a more favourable outcome than prompt compliance? The answer may be legally settled by the statutory language. The larger question of tax equity, however, remains. Has Section 16(5) ended the litigation? Section 16(5) has unquestionably resolved a major category of ITC disputes. But it would be premature to conclude that litigation surrounding the time limit for claiming ITC has ended. The amendment has simply changed the questions being litigated. Earlier, the principal question was: Was the ITC claimed within the time limit prescribed under Section 16(4)? The emerging questions are far more nuanced:  Can a concluded order be reopened in light of retrospective beneficial legislation?  Can an unrecovered demand continue to be enforced when its substantive foundation has retrospectively disappeared?  What remedy is available to a taxpayer whose appeal was rejected solely on limitation?  Can a taxpayer who has already paid the demand ever successfully challenge the statutory refund bar?  And should two taxpayers with identical substantive eligibility face different outcomes merely because one paid the demand while the other continued to litigate? These questions extend beyond Section 16(5). They concern the larger relationship between substantive justice, procedural finality and certainty in tax administration. Section 16(5) may have closed one chapter of GST litigation. But it has certainly opened another. I would be interested to hear the views of fellow tax professionals, legal practitioners and businesses: Do you believe Section 16(5) has truly resolved the controversy — or has it merely shifted the litigation to a new set of questions?

Saranya P
Jun 10, 2026 · 15 min read

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